UML as a cell and biochemistry modeling language

Webb, K., & White, T. (2005). UML as a cell and biochemistry modeling language. BioSystems, 80, 283302.

Figure 1 Simple example system

Figure 2 Inheritance hierarchy diagram

Figure 3 Containment hierarchy diagram

Figure 4 Entire structure - Step 1

Figure 5 Protocols

Figure 6 Eukaryotic cell

Figure 7 Entire structure - Step 2

Figure 8 Adjacency sequence diagram

Figure 9 Entire structure - Step 3

Figure 10 Enzyme state diagram

Figure 12 Differences graph