org.primordion.xholon.tutorials.rcs
Class XhRcs1

java.lang.Object
  extended byorg.primordion.xholon.base.Xholon
      extended byorg.primordion.xholon.base.XholonWithPorts
          extended byorg.primordion.xholon.tutorials.rcs.XhRcs1
All Implemented Interfaces:
CeRcs1, IXholon

public class XhRcs1
extends XholonWithPorts
implements CeRcs1

Regulated Catalyzing System - Glycogen Phosphorylase (GP) - Symbolic. This version of the GP system uses symbols for state and event, rather than a UML MagicDraw FSM. It is manually coded rather than generated from a UML MagicDraw model.

Since:
0.3 (Created on Jan 26, 2006)
Author:
Ken Webb

Field Summary
static int MAX_SUB
           
static int Product
           
static int Regulation
           
 java.lang.String roleName
           
 int state
           
static int Substrate
           
 double val
           
 
Fields inherited from class org.primordion.xholon.base.XholonWithPorts
port
 
Fields inherited from class org.primordion.xholon.base.Xholon
DEFAULT_LEVEL, interaction, interactionsEnabled
 
Fields inherited from interface org.primordion.xholon.tutorials.rcs.CeRcs1
EnzymeCE, Glucose_1_PhosphateCE, GlycogenCE, GlycogenPhosphorylaseCE, GlycogenPhosphorylaseSystemCE, includeCE, PhosphorylaseKinaseCE, PhosphorylasePhosphataseCE, PolysaccharideCE, RcsEnzymeCE, SmallMoleculeCE, XholonClassCE
 
Fields inherited from interface org.primordion.xholon.base.IXholon
DEFAULT_SIZE_MSG_Q, NINCLUDE_PSC, NINCLUDE_PSx, NINCLUDE_PxC, NINCLUDE_Pxx, NINCLUDE_xSC, NINCLUDE_xSx, NINCLUDE_xxC, NINCLUDE_xxx
 
Constructor Summary
XhRcs1()
           
 
Method Summary
 void act()
          Do some action during this time step.
 void decVal(double decAmount)
          Decrement an internal double value by a specified amount.
 java.lang.String getRoleName()
          Get name of the role played by this Xholon within a specific context.
 double getVal()
          Get the value of a "double" maintained by this xholon instance.
 void incVal(double incAmount)
          Increment an internal double value by a specified amount.
 void initialize()
          Initialize the tree node.
 void processReceivedMessage(Message msg)
          Process a received ROOM/UML2 message taken from the message queue.
 void setRoleName(java.lang.String roleName)
          Set name of the role played by this Xholon within a specific context.
 void setVal(double val)
          Set the value of a "double" maintained by this xholon instance.
 java.lang.String toString()
           
 
Methods inherited from class org.primordion.xholon.base.XholonWithPorts
configure, getMaxPorts, getPort, isActiveObject, isBound, isContainer, isPassiveObject, postConfigure, setMaxPorts, setPorts, terminate
 
Methods inherited from class org.primordion.xholon.base.Xholon
appendChild, appendChild, appendChild, cleanup, configure, createStructure, decVal, depth, draw, getChildNodes, getFirstChild, getFirstSibling, getId, getLastChild, getLastSibling, getName, getNeighbors, getNextId, getNextSibling, getNthChild, getNthSibling, getNumChildren, getNumSiblings, getParentNode, getPreviousSibling, getRootNode, getSiblings, getSizeMessageQ, getUid, getVal_boolean, getVal_byte, getVal_char, getVal_double, getVal_float, getVal_int, getVal_long, getVal_Object, getVal_short, getVal_String, getXhc, getXhcId, getXhcName, getXhType, handleNodeSelection, hasAncestor, hasChildNodes, hasChildOrSiblingNodes, hasNextSibling, hasParentNode, height, incVal, initStatics, inOrderPrint, insertAfter, insertBefore, insertFirstChild, isExternal, isInternal, isLeaf, isRootNode, performActivity, performActivity, performBooleanActivity, performBooleanActivity, performDoubleActivity, performGuard, performVoidActivity, postAct, postOrderPrint, postReconfigure, preAct, preConfigure, preOrderPrint, preReconfigure, print, println, processMessageQ, reconfigure, remove, removeChild, resetNextId, sendMessage, sendMessage, sendMessage, setAttributeVal, setFactory, setFirstChild, setId, setNextSibling, setParentChildLinks, setParentNode, setParentSiblingLinks, setSizeMessageQ, setUid, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVariableValue, setXhc, swapNode, treeSize, writeXml
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

Substrate

public static final int Substrate
See Also:
Constant Field Values

Product

public static final int Product
See Also:
Constant Field Values

Regulation

public static final int Regulation
See Also:
Constant Field Values

MAX_SUB

public static int MAX_SUB

state

public int state

roleName

public java.lang.String roleName

val

public double val
Constructor Detail

XhRcs1

public XhRcs1()
Method Detail

initialize

public void initialize()
Description copied from interface: IXholon
Initialize the tree node. Typically this is only used to re-initialize a node, such as when it is reused through the TreeNodeFactoryStatic.

Specified by:
initialize in interface IXholon
Overrides:
initialize in class XholonWithPorts

setRoleName

public void setRoleName(java.lang.String roleName)
Description copied from interface: IXholon
Set name of the role played by this Xholon within a specific context.

Specified by:
setRoleName in interface IXholon
Overrides:
setRoleName in class Xholon

getRoleName

public java.lang.String getRoleName()
Description copied from interface: IXholon
Get name of the role played by this Xholon within a specific context.

Specified by:
getRoleName in interface IXholon
Overrides:
getRoleName in class Xholon

getVal

public double getVal()
Description copied from interface: IXholon
Get the value of a "double" maintained by this xholon instance. If a class that implements this interface does not maintain such a value, it should return 0.0 This method can be used in place of getVal_double()

Specified by:
getVal in interface IXholon
Overrides:
getVal in class Xholon

setVal

public void setVal(double val)
Description copied from interface: IXholon
Set the value of a "double" maintained by this xholon instance.

Specified by:
setVal in interface IXholon
Overrides:
setVal in class Xholon

incVal

public void incVal(double incAmount)
Description copied from interface: IXholon
Increment an internal double value by a specified amount. This is a convenience method.

Specified by:
incVal in interface IXholon
Overrides:
incVal in class Xholon

decVal

public void decVal(double decAmount)
Description copied from interface: IXholon
Decrement an internal double value by a specified amount. This is a convenience method.

Specified by:
decVal in interface IXholon
Overrides:
decVal in class Xholon

act

public void act()
Description copied from interface: IXholon
Do some action during this time step. Typically all nodes in the tree will do their pre-actions (optional), then all will do their actions, and then all will do their post-actions (optional).

Specified by:
act in interface IXholon
Overrides:
act in class Xholon

processReceivedMessage

public void processReceivedMessage(Message msg)
Description copied from interface: IXholon
Process a received ROOM/UML2 message taken from the message queue. All sent messages are placed in queues before they are processed.

Specified by:
processReceivedMessage in interface IXholon
Overrides:
processReceivedMessage in class Xholon

toString

public java.lang.String toString()
Overrides:
toString in class Xholon