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java.lang.Object org.primordion.cellontro.io.sbml.Sbml2Cellontro
Sbml2Cellontro transforms SBML files into Xholon/Cellontro model files. This is a standalone application that runs separately from a Cellontro application. To execute a model specified in an SBML file: (1) transform it from SBML to Xholon/Cellontro format using this program, (2) execute AppSbml passing in the name of the newly generated application as a parameter.
AppSbml.java
,
copyright, license, and author information in the writeXhNode() method.
Constructor Summary | |
Sbml2Cellontro()
Constructor. |
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Sbml2Cellontro(java.lang.String sbmlFileName)
Constructor. |
Method Summary | |
boolean |
initialize(java.lang.String sbmlFileName)
Initialize the reader, document and model. |
static void |
main(java.lang.String[] args)
main |
void |
writeAll()
Write all xml, text and java files. |
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public Sbml2Cellontro()
public Sbml2Cellontro(java.lang.String sbmlFileName)
sbmlFileName
- Name of the SBML file to be read in.Method Detail |
public boolean initialize(java.lang.String sbmlFileName)
ISbml2Cellontro
initialize
in interface ISbml2Cellontro
sbmlFileName
- Name of an SBML XML file.
public void writeAll()
ISbml2Cellontro
writeAll
in interface ISbml2Cellontro
public static void main(java.lang.String[] args)
args
-
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